IL_1VQN_011
3D structure
- PDB id
- 1VQN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CUCUCAUC*GUGCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQN_011 not in the Motif Atlas
- Homologous match to IL_4V9F_011
- Geometric discrepancy: 0.4451
- The information below is about IL_4V9F_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22028.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
1VQN|1|0|C|280
1VQN|1|0|U|281
1VQN|1|0|C|282
1VQN|1|0|U|283
1VQN|1|0|C|284
1VQN|1|0|A|285
1VQN|1|0|U|286
1VQN|1|0|C|287
*
1VQN|1|0|G|365
1VQN|1|0|U|366
1VQN|1|0|G|367
1VQN|1|0|C|368
1VQN|1|0|G|369
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain M
- 50S Ribosomal Protein L15E
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