IL_1VQN_069

3D structure

PDB id

1VQN (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGAACAC*GACGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQN_069 not in the Motif Atlas

Homologous match to IL_4V9F_069

Geometric discrepancy: 0.1099

The information below is about IL_4V9F_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

1VQN|1|0|U|1907
1VQN|1|0|G|1908
1VQN|1|0|A|1909
1VQN|1|0|A|1910
1VQN|1|0|C|1911
1VQN|1|0|A|1912
1VQN|1|0|C|1913
*
1VQN|1|0|G|1926
1VQN|1|0|A|1927
1VQN|1|0|C|1928
1VQN|1|0|G|1929
1VQN|1|0|A|1930
1VQN|1|0|A|1931
1VQN|1|0|G|1932

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 3

50S ribosomal protein L44E

Chain A

50S ribosomal protein L2P