3D structure

PDB id
1VQN (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CC-HPMN AND CCA-PHE-CAP-BIO bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
GGAGUAC*GGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQN_103 not in the Motif Atlas
Homologous match to IL_4V9F_106
Geometric discrepancy: 0.035
The information below is about IL_4V9F_106
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_26307.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

1VQN|1|9|G|3075
1VQN|1|9|G|3076
1VQN|1|9|A|3077
1VQN|1|9|G|3078
1VQN|1|9|U|3079
1VQN|1|9|A|3080
1VQN|1|9|C|3081
*
1VQN|1|9|G|3101
1VQN|1|9|G|3102
1VQN|1|9|A|3103
1VQN|1|9|A|3104
1VQN|1|9|A|3105
1VQN|1|9|C|3106

Current chains

Chain 9
5S ribosomal RNA

Nearby chains

Chain 0
Large subunit ribosomal RNA; LSU rRNA
Chain H
50S RIBOSOMAL PROTEIN L10E
Chain W
50S ribosomal protein L30P

Coloring options:


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