IL_1VQO_009

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

AG*CAAUGU

Length

8 nucleotides

Bulged bases

1VQO|1|0|U|263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_009 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.0461

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

1VQO|1|0|A|248
1VQO|1|0|G|249
*
1VQO|1|0|C|260
1VQO|1|0|A|261
1VQO|1|0|A|262
1VQO|1|0|U|263
1VQO|1|0|G|264
1VQO|1|0|U|265

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain F

50S ribosomal protein L7AE

Chain M

50S Ribosomal Protein L15E