IL_1VQO_022

3D structure

PDB id

1VQO (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.2 Å

Loop

Sequence

CAUG*CG

Length

6 nucleotides

Bulged bases

1VQO|1|0|A|700, 1VQO|1|0|U|701

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQO_022 not in the Motif Atlas

Homologous match to IL_4V9F_021

Geometric discrepancy: 0.0726

The information below is about IL_4V9F_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.3

Basepair signature

cWW-cWW

Number of instances in this motif group

30

Unit IDs

1VQO|1|0|C|699
1VQO|1|0|A|700
1VQO|1|0|U|701
1VQO|1|0|G|702
*
1VQO|1|0|C|726
1VQO|1|0|G|727

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain L

50S ribosomal protein L15P

Chain O

50S ribosomal protein L18e