3D structure

PDB id
1VQO (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of CCPMN bound to the large ribosomal subunit haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.2 Å

Loop

Sequence
GGGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQO_072 not in the Motif Atlas
Homologous match to IL_4V9F_072
Geometric discrepancy: 0.0299
The information below is about IL_4V9F_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_55516.2
Basepair signature
cWW-cWW-cSH-cWW
Number of instances in this motif group
7

Unit IDs

1VQO|1|0|G|2090
1VQO|1|0|G|2091
1VQO|1|0|G|2092
1VQO|1|0|G|2093
*
1VQO|1|0|U|2652
1VQO|1|0|A|2653
1VQO|1|0|C|2654

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain B
50S ribosomal protein L3P
Chain J
50S ribosomal protein L13P
Chain R
50S ribosomal protein L22P

Coloring options:


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