3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
CUCUCAUC*GUGCG
Length
13 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQP_011 not in the Motif Atlas
Homologous match to IL_4V9F_011
Geometric discrepancy: 0.4382
The information below is about IL_4V9F_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

1VQP|1|0|C|280
1VQP|1|0|U|281
1VQP|1|0|C|282
1VQP|1|0|U|283
1VQP|1|0|C|284
1VQP|1|0|A|285
1VQP|1|0|U|286
1VQP|1|0|C|287
*
1VQP|1|0|G|365
1VQP|1|0|U|366
1VQP|1|0|G|367
1VQP|1|0|C|368
1VQP|1|0|G|369

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain M
50S Ribosomal Protein L15E

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2864 s