IL_1VQP_016

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

UACAAG*CGA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_016 not in the Motif Atlas

Homologous match to IL_4V9F_015

Geometric discrepancy: 0.0454

The information below is about IL_4V9F_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59302.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

1VQP|1|0|U|548
1VQP|1|0|A|549
1VQP|1|0|C|550
1VQP|1|0|A|551
1VQP|1|0|A|552
1VQP|1|0|G|553
*
1VQP|1|0|C|606
1VQP|1|0|G|607
1VQP|1|0|A|608

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Y

50S ribosomal protein L32E