IL_1VQP_021
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- CUAAC*GGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_021 not in the Motif Atlas
- Homologous match to IL_4V9F_020
- Geometric discrepancy: 0.0334
- The information below is about IL_4V9F_020
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
1VQP|1|0|C|663
1VQP|1|0|U|664
1VQP|1|0|A|665
1VQP|1|0|A|666
1VQP|1|0|C|667
*
1VQP|1|0|G|679
1VQP|1|0|G|680
1VQP|1|0|G|681
1VQP|1|0|A|682
1VQP|1|0|G|683
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain L
- 50S ribosomal protein L15P
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