IL_1VQP_023

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGCAG*CGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_023 not in the Motif Atlas

Homologous match to IL_4V9F_022

Geometric discrepancy: 0.0501

The information below is about IL_4V9F_022

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

1VQP|1|0|C|705
1VQP|1|0|G|706
1VQP|1|0|C|707
1VQP|1|0|A|708
1VQP|1|0|G|709
*
1VQP|1|0|C|719
1VQP|1|0|G|720
1VQP|1|0|A|721
1VQP|1|0|G|722
1VQP|1|0|G|723

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L18e