IL_1VQP_038

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

UUAAG*CGAGA

Length

10 nucleotides

Bulged bases

1VQP|1|0|G|1260

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_038 not in the Motif Atlas

Homologous match to IL_4V9F_037

Geometric discrepancy: 0.0246

The information below is about IL_4V9F_037

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

1VQP|1|0|U|1095
1VQP|1|0|U|1096
1VQP|1|0|A|1097
1VQP|1|0|A|1098
1VQP|1|0|G|1099
*
1VQP|1|0|C|1257
1VQP|1|0|G|1258
1VQP|1|0|A|1259
1VQP|1|0|G|1260
1VQP|1|0|A|1261

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain W

50S ribosomal protein L30P

Chain Y

50S ribosomal protein L32E