3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
UCCCCAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQP_039 not in the Motif Atlas
Homologous match to IL_4V9F_038
Geometric discrepancy: 0.0525
The information below is about IL_4V9F_038
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

1VQP|1|0|U|1101
1VQP|1|0|C|1102
1VQP|1|0|C|1103
1VQP|1|0|C|1104
1VQP|1|0|C|1105
1VQP|1|0|A|1106
1VQP|1|0|A|1107
1VQP|1|0|G|1108
*
1VQP|1|0|C|1254
1VQP|1|0|A|1255

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain J
50S ribosomal protein L13P
Chain W
50S ribosomal protein L30P

Coloring options:


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