IL_1VQP_053
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- ACC*GACU
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_053 not in the Motif Atlas
- Homologous match to IL_4V9F_053
- Geometric discrepancy: 0.0684
- The information below is about IL_4V9F_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09990.4
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
1VQP|1|0|A|1465
1VQP|1|0|C|1466
1VQP|1|0|C|1467
*
1VQP|1|0|G|1475
1VQP|1|0|A|1476
1VQP|1|0|C|1477
1VQP|1|0|U|1478
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain 1
- 50S ribosomal protein L37e
- Chain A
- 50S ribosomal protein L2P
- Chain M
- 50S Ribosomal Protein L15E
Coloring options: