IL_1VQP_056

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

CGAAC*GCAUAG

Length

11 nucleotides

Bulged bases

1VQP|1|0|U|1625

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_056 not in the Motif Atlas

Homologous match to IL_4V9F_056

Geometric discrepancy: 0.0724

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

1VQP|1|0|C|1570
1VQP|1|0|G|1571
1VQP|1|0|A|1572
1VQP|1|0|A|1573
1VQP|1|0|C|1574
*
1VQP|1|0|G|1622
1VQP|1|0|C|1623
1VQP|1|0|A|1624
1VQP|1|0|U|1625
1VQP|1|0|A|1626
1VQP|1|0|G|1627

Current chains

Chain 0

23S ribosomal rna

Nearby chains