IL_1VQP_082

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

UCG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_082 not in the Motif Atlas

Geometric match to IL_4V9F_083

Geometric discrepancy: 0.0533

The information below is about IL_4V9F_083

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

1VQP|1|0|U|2492
1VQP|1|0|C|2493
1VQP|1|0|G|2494
*
1VQP|1|0|U|2528
1VQP|1|0|G|2529

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 4

5'-R(*(DC)P*(DC)P*(PPU)*(LOF)P*(PO2)P*AP*C*C)-3'

Chain 9

5S ribosomal RNA; 5S rRNA

Chain H

50S RIBOSOMAL PROTEIN L10E