IL_1VQP_093
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- UGUAC*GGUAG
- Length
- 10 nucleotides
- Bulged bases
- 1VQP|1|0|U|2726
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_093 not in the Motif Atlas
- Homologous match to IL_4V9F_094
- Geometric discrepancy: 0.0538
- The information below is about IL_4V9F_094
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_23774.1
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Number of instances in this motif group
- 11
Unit IDs
1VQP|1|0|U|2724
1VQP|1|0|G|2725
1VQP|1|0|U|2726
1VQP|1|0|A|2727
1VQP|1|0|C|2728
*
1VQP|1|0|G|2754
1VQP|1|0|G|2755
1VQP|1|0|U|2756
1VQP|1|0|A|2757
1VQP|1|0|G|2758
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain B
- 50S ribosomal protein L3P
- Chain U
- 50S ribosomal protein L24E
- Chain X
- 50S ribosomal protein L31e
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