IL_1VQP_104
3D structure
- PDB id
- 1VQP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.25 Å
Loop
- Sequence
- GGAGUAC*GGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VQP_104 not in the Motif Atlas
- Homologous match to IL_4V9F_106
- Geometric discrepancy: 0.0327
- The information below is about IL_4V9F_106
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_26307.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
1VQP|1|9|G|3075
1VQP|1|9|G|3076
1VQP|1|9|A|3077
1VQP|1|9|G|3078
1VQP|1|9|U|3079
1VQP|1|9|A|3080
1VQP|1|9|C|3081
*
1VQP|1|9|G|3101
1VQP|1|9|G|3102
1VQP|1|9|A|3103
1VQP|1|9|A|3104
1VQP|1|9|A|3105
1VQP|1|9|C|3106
Current chains
- Chain 9
- 5S ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain H
- 50S RIBOSOMAL PROTEIN L10E
- Chain W
- 50S ribosomal protein L30P
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