3D structure

PDB id
1VQP (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
2.25 Å

Loop

Sequence
GGUGA*UACCC
Length
10 nucleotides
Bulged bases
1VQP|1|0|G|1165
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VQP_108 not in the Motif Atlas
Geometric match to IL_5J7L_384
Geometric discrepancy: 0.2106
The information below is about IL_5J7L_384
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33835.1
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
1

Unit IDs

1VQP|1|0|G|1162
1VQP|1|0|G|1163
1VQP|1|0|U|1164
1VQP|1|0|G|1165
1VQP|1|0|A|1166
*
1VQP|1|0|U|1180
1VQP|1|0|A|1181
1VQP|1|0|C|1182
1VQP|1|0|C|1183
1VQP|1|0|C|1184

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain I
50S RIBOSOMAL PROTEIN L11P

Coloring options:


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