IL_1VQP_108

3D structure

PDB id

1VQP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the transition state analogue 'RAP' bound to the large ribosomal subunit of haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.25 Å

Loop

Sequence

GGUGA*UACCC

Length

10 nucleotides

Bulged bases

1VQP|1|0|G|1165

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VQP_108 not in the Motif Atlas

Geometric match to IL_5J7L_384

Geometric discrepancy: 0.2106

The information below is about IL_5J7L_384

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_33835.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

1VQP|1|0|G|1162
1VQP|1|0|G|1163
1VQP|1|0|U|1164
1VQP|1|0|G|1165
1VQP|1|0|A|1166
*
1VQP|1|0|U|1180
1VQP|1|0|A|1181
1VQP|1|0|C|1182
1VQP|1|0|C|1183
1VQP|1|0|C|1184

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11P