IL_1VVJ_045

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

1VVJ|1|QA|A|1130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_045 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.3969

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1VVJ|1|QA|C|1129
1VVJ|1|QA|A|1130
1VVJ|1|QA|G|1131
1VVJ|1|QA|C|1132
*
1VVJ|1|QA|G|1142
1VVJ|1|QA|G|1143

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QI

30S ribosomal protein S9