IL_1VVJ_066
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- UGAGUAG*CGAAAG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_066 not in the Motif Atlas
- Homologous match to IL_7RQB_007
- Geometric discrepancy: 0.0823
- The information below is about IL_7RQB_007
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
1VVJ|1|RA|U|239
1VVJ|1|RA|G|240
1VVJ|1|RA|A|241
1VVJ|1|RA|G|242
1VVJ|1|RA|U|243
1VVJ|1|RA|A|244
1VVJ|1|RA|G|245
*
1VVJ|1|RA|C|253
1VVJ|1|RA|G|254
1VVJ|1|RA|A|255
1VVJ|1|RA|A|256
1VVJ|1|RA|A|257
1VVJ|1|RA|G|258
Current chains
- Chain RA
- 23S rRNA
Nearby chains
- Chain R8
- tRNA acceptor end mimic
- Chain RP
- 50S ribosomal protein L15
Coloring options: