IL_1VVJ_078

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

1VVJ|1|RA|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_078 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.0755

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

1VVJ|1|RA|C|697
1VVJ|1|RA|C|698
*
1VVJ|1|RA|G|763
1VVJ|1|RA|A|764
1VVJ|1|RA|G|765

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2