3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
UAG*CAGG
Length
7 nucleotides
Bulged bases
1VVJ|1|RA|G|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VVJ_114 not in the Motif Atlas
Homologous match to IL_7RQB_056
Geometric discrepancy: 0.2511
The information below is about IL_7RQB_056
Detailed Annotation
Isolated tWW turn
Broad Annotation
No text annotation
Motif group
IL_54997.7
Basepair signature
cWW-tWW-cWW
Number of instances in this motif group
8

Unit IDs

1VVJ|1|RA|U|1433
1VVJ|1|RA|A|1434
1VVJ|1|RA|G|1435
*
1VVJ|1|RA|C|1557
1VVJ|1|RA|A|1558
1VVJ|1|RA|G|1559
1VVJ|1|RA|G|1560

Current chains

Chain RA
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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