IL_1VVJ_128

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

1VVJ|1|RA|G|1801, 1VVJ|1|RA|G|1816, 1VVJ|1|RA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_128 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0737

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

1VVJ|1|RA|U|1798
1VVJ|1|RA|G|1799
1VVJ|1|RA|C|1800
1VVJ|1|RA|G|1801
1VVJ|1|RA|A|1802
1VVJ|1|RA|A|1803
1VVJ|1|RA|C|1804
*
1VVJ|1|RA|G|1813
1VVJ|1|RA|G|1814
1VVJ|1|RA|A|1815
1VVJ|1|RA|G|1816
1VVJ|1|RA|G|1817
1VVJ|1|RA|U|1818
1VVJ|1|RA|A|1819
1VVJ|1|RA|U|1820
1VVJ|1|RA|A|1821

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2