3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
GC*GCAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VVJ_134 not in the Motif Atlas
Homologous match to IL_7RQB_076
Geometric discrepancy: 0.1173
The information below is about IL_7RQB_076
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_59677.2
Basepair signature
cWW-cWW
Number of instances in this motif group
19

Unit IDs

1VVJ|1|RA|G|1933
1VVJ|1|RA|C|1934
*
1VVJ|1|RA|G|1964
1VVJ|1|RA|C|1965
1VVJ|1|RA|A|1966
1VVJ|1|RA|C|1967

Current chains

Chain RA
23S rRNA

Nearby chains

Chain QV
Transfer RNA; tRNA

Coloring options:


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