IL_1VVJ_134

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_134 not in the Motif Atlas

Homologous match to IL_7RQB_076

Geometric discrepancy: 0.1173

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

1VVJ|1|RA|G|1933
1VVJ|1|RA|C|1934
*
1VVJ|1|RA|G|1964
1VVJ|1|RA|C|1965
1VVJ|1|RA|A|1966
1VVJ|1|RA|C|1967

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QV

Transfer RNA; tRNA