IL_1VVJ_147

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_147 not in the Motif Atlas

Homologous match to IL_7A0S_081

Geometric discrepancy: 0.1179

The information below is about IL_7A0S_081

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

1VVJ|1|RA|C|2350
1VVJ|1|RA|G|2351
1VVJ|1|RA|A|2352
1VVJ|1|RA|G|2353
*
1VVJ|1|RA|C|2364
1VVJ|1|RA|G|2365
1VVJ|1|RA|A|2366
1VVJ|1|RA|G|2367

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R0

50S ribosomal protein L27

Chain R8

tRNA acceptor end mimic