IL_1VVJ_164

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

1VVJ|1|RA|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_164 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.1006

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1VVJ|1|RA|G|2737
1VVJ|1|RA|A|2738
1VVJ|1|RA|U|2739
1VVJ|1|RA|A|2740
1VVJ|1|RA|A|2741
1VVJ|1|RA|C|2742
*
1VVJ|1|RA|G|2762
1VVJ|1|RA|G|2763
1VVJ|1|RA|A|2764
1VVJ|1|RA|A|2765
1VVJ|1|RA|G|2766
1VVJ|1|RA|C|2767

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RH

50S ribosomal protein L6

Chain RN

50S ribosomal protein L13