IL_1VVJ_247
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 1VVJ|1|YA|G|801, 1VVJ|1|YA|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_247 not in the Motif Atlas
- Geometric match to IL_4WF9_021
- Geometric discrepancy: 0.0968
- The information below is about IL_4WF9_021
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VVJ|1|YA|G|674
1VVJ|1|YA|A|675
1VVJ|1|YA|A|676
1VVJ|1|YA|A|677
1VVJ|1|YA|C|678
*
1VVJ|1|YA|G|799
1VVJ|1|YA|A|800
1VVJ|1|YA|G|801
1VVJ|1|YA|A|802
1VVJ|1|YA|U|803
1VVJ|1|YA|A|804
1VVJ|1|YA|G|805
1VVJ|1|YA|C|806
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YF
- 50S ribosomal protein L4
- Chain YP
- 50S ribosomal protein L15
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