IL_1VVJ_252
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- GGA*UAACC
- Length
- 8 nucleotides
- Bulged bases
- 1VVJ|1|YA|G|776, 1VVJ|1|YA|A|788, 1VVJ|1|YA|A|789, 1VVJ|1|YA|C|790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_252 not in the Motif Atlas
- Homologous match to IL_7RQB_023
- Geometric discrepancy: 0.0928
- The information below is about IL_7RQB_023
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.6
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
1VVJ|1|YA|G|775
1VVJ|1|YA|G|776
1VVJ|1|YA|A|777
*
1VVJ|1|YA|U|787
1VVJ|1|YA|A|788
1VVJ|1|YA|A|789
1VVJ|1|YA|C|790
1VVJ|1|YA|C|791
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L35
- Chain YD
- 50S ribosomal protein L2
- Chain YF
- 50S ribosomal protein L4
- Chain YW
- 50S ribosomal protein L22
Coloring options: