IL_1VVJ_267
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- CUAAGUG*CUUAAG
- Length
- 13 nucleotides
- Bulged bases
- 1VVJ|1|YA|U|1142, 1VVJ|1|YA|A|1143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_267 not in the Motif Atlas
- Geometric match to IL_4WF9_039
- Geometric discrepancy: 0.1431
- The information below is about IL_4WF9_039
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_57188.5
- Basepair signature
- cWW-tWW-L-tWW-cWW-cSH
- Number of instances in this motif group
- 5
Unit IDs
1VVJ|1|YA|C|1018
1VVJ|1|YA|U|1019
1VVJ|1|YA|A|1020
1VVJ|1|YA|A|1021
1VVJ|1|YA|G|1022
1VVJ|1|YA|U|1023
1VVJ|1|YA|G|1024
*
1VVJ|1|YA|C|1140
1VVJ|1|YA|U|1141
1VVJ|1|YA|U|1142
1VVJ|1|YA|A|1142|||A
1VVJ|1|YA|A|1143
1VVJ|1|YA|G|1144
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain YH
- 50S ribosomal protein L6
- Chain YN
- 50S ribosomal protein L13
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