IL_1VVJ_296

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

1VVJ|1|YA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_296 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1293

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

1VVJ|1|YA|C|1686
1VVJ|1|YA|G|1687
1VVJ|1|YA|U|1688
1VVJ|1|YA|A|1689
1VVJ|1|YA|A|1690
1VVJ|1|YA|C|1691
*
1VVJ|1|YA|G|1696
1VVJ|1|YA|G|1697
1VVJ|1|YA|A|1698
1VVJ|1|YA|G|1699
1VVJ|1|YA|A|1700
1VVJ|1|YA|A|1701
1VVJ|1|YA|G|1702

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2