3D structure

PDB id
1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.44 Å

Loop

Sequence
CGUAAC*GGAGAAG
Length
13 nucleotides
Bulged bases
1VVJ|1|YA|G|1699
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_1VVJ_296 not in the Motif Atlas
Homologous match to IL_7RQB_068
Geometric discrepancy: 0.1293
The information below is about IL_7RQB_068
Detailed Annotation
tSH-tSH-tHH-tHS
Broad Annotation
No text annotation
Motif group
IL_65969.2
Basepair signature
cWW-tSH-tSH-tHH-tHS-cWW
Number of instances in this motif group
8

Unit IDs

1VVJ|1|YA|C|1686
1VVJ|1|YA|G|1687
1VVJ|1|YA|U|1688
1VVJ|1|YA|A|1689
1VVJ|1|YA|A|1690
1VVJ|1|YA|C|1691
*
1VVJ|1|YA|G|1696
1VVJ|1|YA|G|1697
1VVJ|1|YA|A|1698
1VVJ|1|YA|G|1699
1VVJ|1|YA|A|1700
1VVJ|1|YA|A|1701
1VVJ|1|YA|G|1702

Current chains

Chain YA
23S rRNA

Nearby chains

Chain XA
Small subunit ribosomal RNA; SSU rRNA
Chain YD
50S ribosomal protein L2

Coloring options:


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