IL_1VVJ_305
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- CGAAAUUCCUUG*CCUG
- Length
- 16 nucleotides
- Bulged bases
- 1VVJ|1|YA|A|1938, 1VVJ|1|YA|U|1944
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_305 not in the Motif Atlas
- Homologous match to IL_7A0S_072
- Geometric discrepancy: 0.1601
- The information below is about IL_7A0S_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.3
- Basepair signature
- cWW-L-R-L-cWW-L-L-R-L-R-L
- Number of instances in this motif group
- 2
Unit IDs
1VVJ|1|YA|C|1934
1VVJ|1|YA|G|1935
1VVJ|1|YA|A|1936
1VVJ|1|YA|A|1937
1VVJ|1|YA|A|1938
1VVJ|1|YA|U|1939
1VVJ|1|YA|U|1940
1VVJ|1|YA|C|1941
1VVJ|1|YA|C|1942
1VVJ|1|YA|U|1943
1VVJ|1|YA|U|1944
1VVJ|1|YA|G|1945
*
1VVJ|1|YA|C|1961
1VVJ|1|YA|C|1962
1VVJ|1|YA|U|1963
1VVJ|1|YA|G|1964
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain XA
- Small subunit ribosomal RNA; SSU rRNA
- Chain YD
- 50S ribosomal protein L2
- Chain Z8
- RNA (5'-R(*CP*CP*(PPU))-3')
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