IL_1VVJ_313

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

1VVJ|1|YA|G|2112, 1VVJ|1|YA|G|2115

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_313 not in the Motif Atlas

Geometric match to IL_1KXK_003

Geometric discrepancy: 0.196

The information below is about IL_1KXK_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

1VVJ|1|YA|G|2110
1VVJ|1|YA|C|2111
1VVJ|1|YA|G|2112
1VVJ|1|YA|U|2113
1VVJ|1|YA|A|2114
1VVJ|1|YA|G|2115
1VVJ|1|YA|G|2116
1VVJ|1|YA|A|2117
1VVJ|1|YA|U|2118
1VVJ|1|YA|A|2119
1VVJ|1|YA|G|2120
*
1VVJ|1|YA|C|2178
1VVJ|1|YA|C|2179

Current chains

Chain YA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA