IL_1VVJ_318

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

1VVJ|1|YA|C|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_318 not in the Motif Atlas

Homologous match to IL_4WF9_088

Geometric discrepancy: 0.5342

The information below is about IL_4WF9_088

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

1VVJ|1|YA|U|2401
1VVJ|1|YA|C|2402
1VVJ|1|YA|C|2403
*
1VVJ|1|YA|G|2414
1VVJ|1|YA|G|2415

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain Y6

50S ribosomal protein L34

Chain Y8

tRNA acceptor end mimic

Chain YP

50S ribosomal protein L15