IL_1VVJ_339

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAACC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_339 not in the Motif Atlas

Homologous match to IL_7RQB_112

Geometric discrepancy: 0.1026

The information below is about IL_7RQB_112

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VVJ|1|YB|G|23
1VVJ|1|YB|G|24
1VVJ|1|YB|A|25
1VVJ|1|YB|A|26
1VVJ|1|YB|C|27
1VVJ|1|YB|C|28
*
1VVJ|1|YB|G|56
1VVJ|1|YB|A|57
1VVJ|1|YB|A|58
1VVJ|1|YB|A|59
1VVJ|1|YB|C|60

Current chains

Chain YB

5S rRNA

Nearby chains

Chain YG

50S ribosomal protein L5

Chain YS

50S ribosomal protein L18