IL_1VVJ_351

3D structure

PDB id

1VVJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VVJ_351 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0926

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

1VVJ|1|RA|G|1666
1VVJ|1|RA|G|1667
1VVJ|1|RA|A|1668
1VVJ|1|RA|A|1669
1VVJ|1|RA|C|1670
1VVJ|1|RA|U|1671
1VVJ|1|RA|C|1672
1VVJ|1|RA|U|1673
1VVJ|1|RA|G|1674
*
1VVJ|1|RA|C|1990
1VVJ|1|RA|U|1991
1VVJ|1|RA|G|1992
1VVJ|1|RA|U|1993
1VVJ|1|RA|C|1994

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14