IL_1VVJ_361
3D structure
- PDB id
- 1VVJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Frameshift Suppressor tRNA SufA6 bound to Codon CCC-G on the Ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.44 Å
Loop
- Sequence
- UGCA*UG
- Length
- 6 nucleotides
- Bulged bases
- 1VVJ|1|QA|G|1053, 1VVJ|1|QA|C|1054
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_1VVJ_361 not in the Motif Atlas
- Geometric match to IL_1FUF_002
- Geometric discrepancy: 0.333
- The information below is about IL_1FUF_002
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.5
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 31
Unit IDs
1VVJ|1|QA|U|1052
1VVJ|1|QA|G|1053
1VVJ|1|QA|C|1054
1VVJ|1|QA|A|1055
*
1VVJ|1|QA|U|1205
1VVJ|1|QA|G|1206
Current chains
- Chain QA
- 16S rRNA
Nearby chains
- Chain QC
- 30S ribosomal protein S3
- Chain QJ
- 30S ribosomal protein S10
- Chain QN
- 30S ribosomal protein S14
- Chain QX
- A-site ASL SufA6
- Chain QY
- messenger RNA
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