IL_1VW3_017

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAG*CAGAUAGC

Length

13 nucleotides

Bulged bases

1VW3|1|A|G|692, 1VW3|1|A|G|696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53635.6

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

9

Unit IDs

1VW3|1|A|G|583
1VW3|1|A|A|584
1VW3|1|A|A|585
1VW3|1|A|A|586
1VW3|1|A|G|587
*
1VW3|1|A|C|690
1VW3|1|A|A|691
1VW3|1|A|G|692
1VW3|1|A|A|693
1VW3|1|A|U|694
1VW3|1|A|A|695
1VW3|1|A|G|696
1VW3|1|A|C|697

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain D

54S ribosomal protein YmL6, mitochondrial