IL_1VW3_053

3D structure

PDB id

1VW3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAGAA*UUAAGUAUA

Length

16 nucleotides

Bulged bases

1VW3|1|A|A|1708, 1VW3|1|A|A|1724, 1VW3|1|A|U|1728

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71229.2

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

1VW3|1|A|U|1705
1VW3|1|A|G|1706
1VW3|1|A|C|1707
1VW3|1|A|A|1708
1VW3|1|A|G|1709
1VW3|1|A|A|1710
1VW3|1|A|A|1711
*
1VW3|1|A|U|1721
1VW3|1|A|U|1722
1VW3|1|A|A|1723
1VW3|1|A|A|1724
1VW3|1|A|G|1725
1VW3|1|A|U|1726
1VW3|1|A|A|1727
1VW3|1|A|U|1728
1VW3|1|A|A|1729

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial