IL_1VX3_036

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

1VX3|1|5|G|930, 1VX3|1|5|C|931, 1VX3|1|5|A|932, 1VX3|1|5|G|933, 1VX3|1|5|A|935, 1VX3|1|5|C|936, 1VX3|1|5|U|937

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|731
1VX3|1|5|A|732
1VX3|1|5|A|733
1VX3|1|5|G|734
1VX3|1|5|G|735
*
1VX3|1|5|C|928
1VX3|1|5|A|929
1VX3|1|5|G|930
1VX3|1|5|C|931
1VX3|1|5|A|932
1VX3|1|5|G|933
1VX3|1|5|C|934
1VX3|1|5|A|935
1VX3|1|5|C|936
1VX3|1|5|U|937
1VX3|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains