IL_1VX3_045

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

1VX3|1|5|C|1210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_045 not in the Motif Atlas

Geometric match to IL_6XKO_001

Geometric discrepancy: 0.2745

The information below is about IL_6XKO_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

1VX3|1|5|C|1086
1VX3|1|5|A|1087
*
1VX3|1|5|U|1209
1VX3|1|5|C|1210
1VX3|1|5|G|1211

Current chains

Chain 5

28S ribosomal RNA

Nearby chains