IL_1VX3_059

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCGAAAG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

1VX3|1|5|A|1650, 1VX3|1|5|G|1654, 1VX3|1|5|C|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|1520
1VX3|1|5|C|1521
1VX3|1|5|G|1522
1VX3|1|5|A|1523
1VX3|1|5|A|1524
1VX3|1|5|A|1525
1VX3|1|5|G|1526
*
1VX3|1|5|C|1648
1VX3|1|5|U|1649
1VX3|1|5|A|1650
1VX3|1|5|G|1651
1VX3|1|5|U|1652
1VX3|1|5|A|1653
1VX3|1|5|G|1654
1VX3|1|5|C|1655
1VX3|1|5|U|1656
1VX3|1|5|G|1657

Current chains

Chain 5

28S ribosomal RNA

Nearby chains