IL_1VX3_082

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAUCAG*CUGGAG

Length

14 nucleotides

Bulged bases

1VX3|1|5|U|1930, 1VX3|1|5|C|1931, 1VX3|1|5|G|2055, 1VX3|1|5|A|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_082 not in the Motif Atlas

Geometric match to IL_8CRE_054

Geometric discrepancy: 0.2273

The information below is about IL_8CRE_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77278.1

Basepair signature

cWW-tWW-L-tWW-cWW-L

Number of instances in this motif group

2

Unit IDs

1VX3|1|5|C|1926
1VX3|1|5|U|1927
1VX3|1|5|C|1928
1VX3|1|5|A|1929
1VX3|1|5|U|1930
1VX3|1|5|C|1931
1VX3|1|5|A|1932
1VX3|1|5|G|1933
*
1VX3|1|5|C|2053
1VX3|1|5|U|2054
1VX3|1|5|G|2055
1VX3|1|5|G|2056
1VX3|1|5|A|2057
1VX3|1|5|G|2058

Current chains

Chain 5

28S ribosomal RNA

Nearby chains