IL_1VX3_083

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

1VX3|1|5|C|1935, 1VX3|1|5|G|1940, 1VX3|1|5|A|2041, 1VX3|1|5|U|2044, 1VX3|1|5|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_083 not in the Motif Atlas

Geometric match to IL_8P9A_280

Geometric discrepancy: 0.2409

The information below is about IL_8P9A_280

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.2

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

1VX3|1|5|G|1933
1VX3|1|5|A|1934
1VX3|1|5|C|1935
1VX3|1|5|C|1936
1VX3|1|5|C|1937
1VX3|1|5|C|1938
1VX3|1|5|A|1939
1VX3|1|5|G|1940
1VX3|1|5|A|1941
1VX3|1|5|A|1942
1VX3|1|5|A|1943
1VX3|1|5|A|1944
*
1VX3|1|5|U|2038
1VX3|1|5|G|2039
1VX3|1|5|A|2040
1VX3|1|5|A|2041
1VX3|1|5|A|2042
1VX3|1|5|A|2043
1VX3|1|5|U|2044
1VX3|1|5|G|2045
1VX3|1|5|G|2046
1VX3|1|5|A|2047
1VX3|1|5|U|2048
1VX3|1|5|G|2049
1VX3|1|5|G|2050
1VX3|1|5|C|2051
1VX3|1|5|G|2052
1VX3|1|5|C|2053

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA