IL_1VX3_091

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCUUGAAGC*GUGGAG

Length

15 nucleotides

Bulged bases

1VX3|1|5|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|C|2302
1VX3|1|5|C|2303
1VX3|1|5|U|2304
1VX3|1|5|U|2305
1VX3|1|5|G|2306
1VX3|1|5|A|2307
1VX3|1|5|A|2308
1VX3|1|5|G|2309
1VX3|1|5|C|2310
*
1VX3|1|5|G|2328
1VX3|1|5|U|2329
1VX3|1|5|G|2330
1VX3|1|5|G|2331
1VX3|1|5|A|2332
1VX3|1|5|G|2333

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA