IL_1VX3_094

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

1VX3|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_094 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.3942

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

1VX3|1|5|U|2415
1VX3|1|5|G|2416
1VX3|1|5|A|2417
1VX3|1|5|A|2418
1VX3|1|5|C|2419
*
1VX3|1|5|G|2427
1VX3|1|5|A|2428
1VX3|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains