IL_1VX3_112

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

1VX3|1|5|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_112 not in the Motif Atlas

Geometric match to IL_4V9F_062

Geometric discrepancy: 0.2847

The information below is about IL_4V9F_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_28217.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

1VX3|1|5|A|2850
1VX3|1|5|G|2851
1VX3|1|5|U|2852
1VX3|1|5|C|2853
1VX3|1|5|G|2854
1VX3|1|5|G|2855
*
1VX3|1|5|C|3837
1VX3|1|5|U|3838
1VX3|1|5|G|3839
1VX3|1|5|U|3840

Current chains

Chain 5

28S ribosomal RNA

Nearby chains