IL_1VX3_113

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

1VX3|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_113 not in the Motif Atlas

Geometric match to IL_8P9A_307

Geometric discrepancy: 0.1923

The information below is about IL_8P9A_307

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20700.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

1VX3|1|5|C|2867
1VX3|1|5|G|2868
1VX3|1|5|U|2869
1VX3|1|5|A|2870
1VX3|1|5|A|2871
1VX3|1|5|C|2872
*
1VX3|1|5|G|2877
1VX3|1|5|G|2878
1VX3|1|5|A|2879
1VX3|1|5|U|2880
1VX3|1|5|A|2881
1VX3|1|5|A|2882
1VX3|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains