IL_1VX3_119

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

1VX3|1|5|A|3663, 1VX3|1|5|U|3679, 1VX3|1|5|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_119 not in the Motif Atlas

Geometric match to IL_8P9A_311

Geometric discrepancy: 0.164

The information below is about IL_8P9A_311

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14684.2

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

5

Unit IDs

1VX3|1|5|C|3660
1VX3|1|5|G|3661
1VX3|1|5|A|3662
1VX3|1|5|A|3663
1VX3|1|5|G|3664
1VX3|1|5|G|3665
*
1VX3|1|5|U|3677
1VX3|1|5|G|3678
1VX3|1|5|U|3679
1VX3|1|5|U|3680
1VX3|1|5|G|3681
1VX3|1|5|A|3682
1VX3|1|5|C|3683
1VX3|1|5|G|3684

Current chains

Chain 5

28S ribosomal RNA

Nearby chains