IL_1VX3_122

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCGGGGAA*UACCCUAC

Length

16 nucleotides

Bulged bases

1VX3|1|5|A|3901, 1VX3|1|5|C|4560

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

1VX3|1|5|G|3895
1VX3|1|5|C|3896
1VX3|1|5|G|3897
1VX3|1|5|G|3898
1VX3|1|5|G|3899
1VX3|1|5|G|3900
1VX3|1|5|A|3901
1VX3|1|5|A|3902
*
1VX3|1|5|U|4558
1VX3|1|5|A|4559
1VX3|1|5|C|4560
1VX3|1|5|C|4561
1VX3|1|5|C|4562
1VX3|1|5|U|4563
1VX3|1|5|A|4564
1VX3|1|5|C|4565

Current chains

Chain 5

28S ribosomal RNA

Nearby chains