IL_1VX3_124

3D structure

PDB id

1VX3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2. This entry contains the large subunit ribosomal RNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

1VX3|1|5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_1VX3_124 not in the Motif Atlas

Geometric match to IL_5J7L_324

Geometric discrepancy: 0.2043

The information below is about IL_5J7L_324

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

1VX3|1|5|G|3916
1VX3|1|5|A|3917
*
1VX3|1|5|U|4384
1VX3|1|5|A|4385
1VX3|1|5|C|4386
1VX3|1|5|C|4387

Current chains

Chain 5

28S ribosomal RNA

Nearby chains